I posted this in-game via IDEA #39:
"Add some way for queueing to honour afflictions, perhaps a configurable list of afflictions to wait on, or maybe just an option to wait on common afflictions like paralysis/stun."
I imagine from a user perspective, assuming it's not just a basic CONFIG option, it could just be like the tree strategy thing, which I have not actually played with but seems to be pretty intelligent.
If you see any glaring issues with this, please let me know. If you think it's a good idea, please support it to help end my despair.