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This is how I do it. There are possibly easier ways:
1. Export the triggers, aliases, scripts, etc. as separate XML files.
2. Merge the XML files into a single XML file for my package.
3. Create the config.lua file.
4. Throw the single XML file and the config.lua file into a .zip.
Results of disembowel testing | Knight limb counter | GMCP AB files
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If it's not in zip form, you can import an xml file as a 'module' - and whenever you edit anything inside it, contents will get saved back to that xml file - saving you from re-exporting all the time.