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Is it possible to use gmcp to track affliction that didn’t get cured from an opponent. Basically, I looking for a way to keep track of afflictions that my opponent hasn’t cured yet. Is there a better way to accomplish this?
No, gmcp for afflictions is only your toon.
GMCP will, as @Accipiter said, only track YOUR afflictions.
For what you are trying to do (assuming you use Mudlet?) you may want to check out this thread for Austere's AK Tracker.
Be sure to read the whole thread as there may be updates posted, new "common issues" resolved, and the like.